HL_5WF0_110

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WF0_110 not in the Motif Atlas

Homologous match to HL_5L4O_003

Geometric discrepancy: 0.1457

The information below is about HL_5L4O_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5WF0|1|y|G|53
5WF0|1|y|5MU|54
5WF0|1|y|PSU|55
5WF0|1|y|C|56
5WF0|1|y|G|57
5WF0|1|y|A|58
5WF0|1|y|U|59
5WF0|1|y|U|60
5WF0|1|y|C|61

Current chains

Chain y

Phe-tRNA-Phe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain I

50S ribosomal protein L11

Chain z

Elongation factor Tu 2