3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
5WFK|1|a|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WFK_098 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.1165
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

5WFK|1|a|G|1356
5WFK|1|a|A|1357
5WFK|1|a|U|1358
5WFK|1|a|C|1359
5WFK|1|a|A|1360
5WFK|1|a|G|1361
5WFK|1|a|A|1362
5WFK|1|a|A|1363
5WFK|1|a|U|1364
5WFK|1|a|G|1365
5WFK|1|a|C|1366

Current chains

Chain a
16S rRNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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