HL_5WFK_107

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

5WFK|1|y|C|17, 5WFK|1|y|G|18, 5WFK|1|y|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFK_107 not in the Motif Atlas

Homologous match to HL_1FIR_001

Geometric discrepancy: 0.2055

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5WFK|1|y|C|13
5WFK|1|y|A|14
5WFK|1|y|G|15
5WFK|1|y|H2U|16
5WFK|1|y|C|17
5WFK|1|y|G|18
5WFK|1|y|G|19
5WFK|1|y|H2U|20
5WFK|1|y|A|21
5WFK|1|y|G|22

Current chains

Chain y

Phe-tRNA-Phe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

50S ribosomal protein L6