HL_5WFS_065

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5WFS|1|A|U|2797, 5WFS|1|A|U|2798, 5WFS|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFS_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5699

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5WFS|1|A|C|2795
5WFS|1|A|C|2796
5WFS|1|A|U|2797
5WFS|1|A|U|2798
5WFS|1|A|G|2799
5WFS|1|A|A|2800
5WFS|1|A|G|2801

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13