HL_5WIT_013

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5WIT|1|1A|G|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIT_013 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0662

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5WIT|1|1A|G|437
5WIT|1|1A|G|438
5WIT|1|1A|A|439
5WIT|1|1A|C|440
5WIT|1|1A|C|441
5WIT|1|1A|A|442
5WIT|1|1A|C|443
5WIT|1|1A|C|444

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15