HL_5WIT_083

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

5WIT|1|1a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIT_083 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1074

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5WIT|1|1a|G|617
5WIT|1|1a|C|618
5WIT|1|1a|U|619
5WIT|1|1a|C|620
5WIT|1|1a|A|621
5WIT|1|1a|A|622
5WIT|1|1a|C|623

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1p

30S ribosomal protein S16