HL_5WIT_215

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

5WIT|1|2w|G|18, 5WIT|1|2w|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WIT_215 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2313

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2w|C|13
5WIT|1|2w|A|14
5WIT|1|2w|G|15
5WIT|1|2w|G|18
5WIT|1|2w|G|19
5WIT|1|2w|A|21
5WIT|1|2w|G|22

Current chains

Chain 2w

A-site tRNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA