HL_5WIT_223
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WIT_223 not in the Motif Atlas
- Homologous match to HL_6JXM_003
- Geometric discrepancy: 0.3873
- The information below is about HL_6JXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5WIT|1|2y|G|53
5WIT|1|2y|5MU|54
5WIT|1|2y|PSU|55
5WIT|1|2y|C|56
5WIT|1|2y|G|57
5WIT|1|2y|A|58
5WIT|1|2y|U|59
5WIT|1|2y|U|60
5WIT|1|2y|C|61
Current chains
- Chain 2y
- E-site tRNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: