HL_5WIT_231
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 5WIT|1|1y|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WIT_231 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.5666
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5WIT|1|1y|A|31
5WIT|1|1y|PSU|32
5WIT|1|1y|U|33
5WIT|1|1y|G|34
5WIT|1|1y|A|35
5WIT|1|1y|A|36
5WIT|1|1y|MIA|37
5WIT|1|1y|A|38
5WIT|1|1y|PSU|39
Current chains
- Chain 1y
- E-site tRNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
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