HL_5WLC_003

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

5WLC|1|L0|A|252, 5WLC|1|L0|U|253, 5WLC|1|L0|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_003 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.235

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5WLC|1|L0|C|251
5WLC|1|L0|A|252
5WLC|1|L0|U|253
5WLC|1|L0|C|254
5WLC|1|L0|U|255
5WLC|1|L0|U|256
5WLC|1|L0|G|257

Current chains

Chain L0

5' ETS

Nearby chains

Chain SI

Bms1

Chain SN

Utp30

Chain SV

Rrt14