HL_5WLC_004

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

5WLC|1|L0|A|302, 5WLC|1|L0|U|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_004 not in the Motif Atlas

Geometric match to HL_5TBW_071

Geometric discrepancy: 0.1649

The information below is about HL_5TBW_071

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5WLC|1|L0|U|301
5WLC|1|L0|A|302
5WLC|1|L0|A|303
5WLC|1|L0|U|304
5WLC|1|L0|A|305

Current chains

Chain L0

5' ETS

Nearby chains

Chain LO

Utp1

Chain LT

Utp21

Chain LW

Utp7