HL_5WLC_007

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_007 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2319

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5WLC|1|L0|U|514
5WLC|1|L0|G|515
5WLC|1|L0|U|516
5WLC|1|L0|A|517
5WLC|1|L0|A|518
5WLC|1|L0|A|519
5WLC|1|L0|A|520
5WLC|1|L0|G|521

Current chains

Chain L0

5' ETS

Nearby chains

Chain LU

Sof1

Chain SP

Utp20