HL_5WLC_010

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5WLC|1|L1|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_010 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.3009

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5WLC|1|L1|C|190
5WLC|1|L1|C|191
5WLC|1|L1|U|192
5WLC|1|L1|U|193
5WLC|1|L1|U|194
5WLC|1|L1|G|195

Current chains

Chain L1

18S pre-rRNA

Nearby chains