HL_5WLC_016

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5WLC|1|L1|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_016 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1488

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5WLC|1|L1|C|414
5WLC|1|L1|C|415
5WLC|1|L1|A|416
5WLC|1|L1|A|417
5WLC|1|L1|G|418
5WLC|1|L1|G|419

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L6

rpS6_eS6

Chain LX

Kre33

Chain SI

Bms1