HL_5WLC_018

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_018 not in the Motif Atlas

Geometric match to HL_1JID_001

Geometric discrepancy: 0.2374

The information below is about HL_1JID_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5WLC|1|L1|C|491
5WLC|1|L1|A|492
5WLC|1|L1|U|493
5WLC|1|L1|U|494
5WLC|1|L1|C|495
5WLC|1|L1|G|496

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NB

Sas10

Chain SI

Bms1

Chain SL

Utp24

Chain SQ

Fcf2