HL_5WLC_019

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_019 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1705

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5WLC|1|L1|A|520
5WLC|1|L1|A|521
5WLC|1|L1|U|522
5WLC|1|L1|G|523
5WLC|1|L1|U|524
5WLC|1|L1|A|525
5WLC|1|L1|A|526
5WLC|1|L1|A|527
5WLC|1|L1|U|528
5WLC|1|L1|A|529
5WLC|1|L1|C|530
5WLC|1|L1|C|531
5WLC|1|L1|U|532

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain L9

rpS9_uS4

Chain LF

rpS24_eS24

Chain NC

Lcp5

Chain SI

Bms1