HL_5WLC_020

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGCC

Length

6 nucleotides

Bulged bases

5WLC|1|L1|U|563

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_020 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1595

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5WLC|1|L1|G|561
5WLC|1|L1|G|562
5WLC|1|L1|U|563
5WLC|1|L1|G|564
5WLC|1|L1|C|565
5WLC|1|L1|C|566

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain SI

Bms1

Chain SM

Imp4

Chain SR

rpS23_uS12

Chain ST

Nop14

Chain SY

Utp11