HL_5WLC_036

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5WLC|1|L1|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_036 not in the Motif Atlas

Homologous match to HL_8P9A_197

Geometric discrepancy: 0.1844

The information below is about HL_8P9A_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5WLC|1|L1|G|330
5WLC|1|L1|A|331
5WLC|1|L1|U|332
5WLC|1|L1|A|333
5WLC|1|L1|G|334
5WLC|1|L1|U|335
5WLC|1|L1|G|336
5WLC|1|L1|G|337
5WLC|1|L1|C|338

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L8

rpS8_eS8

Chain LD

rpS11_uS17

Chain LV

Enp2