HL_5WNP_012

3D structure

PDB id

5WNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases (A, C, G, U)

461C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNP_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.0982

The information below is about HL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

5WNP|1|A|C|458
5WNP|1|A|G|459
5WNP|1|A|A|460
5WNP|1|A|C|461
5WNP|1|A|G|462
5WNP|1|A|A|463
5WNP|1|A|G|474

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16