HL_5WNP_013
3D structure
- PDB id
- 5WNP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAGCC(7MG)C
- Length
- 8 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WNP_013 not in the Motif Atlas
- Homologous match to HL_4LFB_013
- Geometric discrepancy: 0.1153
- The information below is about HL_4LFB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WNP|1|A|G|521
5WNP|1|A|C|522
5WNP|1|A|A|523
5WNP|1|A|G|524
5WNP|1|A|C|525
5WNP|1|A|C|526
5WNP|1|A|7MG|527
5WNP|1|A|C|528
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain a
- RNA (5'-R(*AP*AP*AP*UP*UP*U)-3')
Coloring options: