HL_5WNT_008

3D structure

PDB id

5WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNT_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0784

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5WNT|1|A|C|320
5WNT|1|A|A|321
5WNT|1|A|C|322
5WNT|1|A|U|323
5WNT|1|A|G|324
5WNT|1|A|A|325
5WNT|1|A|G|326
5WNT|1|A|A|327
5WNT|1|A|C|328
5WNT|1|A|A|329
5WNT|1|A|C|330
5WNT|1|A|G|331
5WNT|1|A|G|332
5WNT|1|A|G|333

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20