HL_5WNT_026

3D structure

PDB id

5WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5WNT|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNT_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.1179

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

5WNT|1|A|G|1134
5WNT|1|A|U|1135
5WNT|1|A|U|1136
5WNT|1|A|C|1137
5WNT|1|A|G|1138
5WNT|1|A|G|1139
5WNT|1|A|C|1140

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9