HL_5WNU_008

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNU_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0949

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5WNU|1|A|C|320
5WNU|1|A|A|321
5WNU|1|A|C|322
5WNU|1|A|U|323
5WNU|1|A|G|324
5WNU|1|A|A|325
5WNU|1|A|G|326
5WNU|1|A|A|327
5WNU|1|A|C|328
5WNU|1|A|A|329
5WNU|1|A|C|330
5WNU|1|A|G|331
5WNU|1|A|G|332
5WNU|1|A|G|333

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20