HL_5WNU_020

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNU_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0545

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5WNU|1|A|C|897
5WNU|1|A|G|898
5WNU|1|A|C|899
5WNU|1|A|A|900
5WNU|1|A|A|901
5WNU|1|A|G|902

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17