3D structure

PDB id
5WNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
5WNU|1|A|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WNU_030 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0967
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5WNU|1|A|G|1356
5WNU|1|A|A|1357
5WNU|1|A|U|1358
5WNU|1|A|C|1359
5WNU|1|A|A|1360
5WNU|1|A|G|1361
5WNU|1|A|C|1361|||A
5WNU|1|A|C|1362
5WNU|1|A|A|1363
5WNU|1|A|U|1364
5WNU|1|A|G|1365
5WNU|1|A|C|1366

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14 type Z
Chain U
30S ribosomal protein Thx

Coloring options:


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