3D structure

PDB id
5WNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
5WNU|1|A|A|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WNU_031 not in the Motif Atlas
Homologous match to HL_4LFB_031
Geometric discrepancy: 0.0839
The information below is about HL_4LFB_031
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

5WNU|1|A|C|1449
5WNU|1|A|U|1450
5WNU|1|A|A|1451
5WNU|1|A|C|1452
5WNU|1|A|G|1453
5WNU|1|A|G|1454

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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