HL_5WSG_002
3D structure
- PDB id
- 5WSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUGCCUUUUACCA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WSG|1|D|U|91
5WSG|1|D|U|92
5WSG|1|D|G|93
5WSG|1|D|C|94
5WSG|1|D|C|95
5WSG|1|D|U|96
5WSG|1|D|U|97
5WSG|1|D|U|98
5WSG|1|D|U|99
5WSG|1|D|A|100
5WSG|1|D|C|101
5WSG|1|D|C|102
5WSG|1|D|A|103
Current chains
- Chain D
- U5 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-exon
- Chain E
- U6 spliceosomal RNA; U6 snRNA
- Chain J
- Pre-mRNA-splicing factor CWC21
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain b
- 3'-exon-intron
Coloring options: