HL_5WSG_005

3D structure

PDB id

5WSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCCUCGCACUUGUGG

Length

15 nucleotides

Bulged bases

5WSG|1|L|C|1107, 5WSG|1|L|U|1110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WSG|1|L|C|1101
5WSG|1|L|C|1102
5WSG|1|L|C|1103
5WSG|1|L|U|1104
5WSG|1|L|C|1105
5WSG|1|L|G|1106
5WSG|1|L|C|1107
5WSG|1|L|A|1108
5WSG|1|L|C|1109
5WSG|1|L|U|1110
5WSG|1|L|U|1111
5WSG|1|L|G|1112
5WSG|1|L|U|1113
5WSG|1|L|G|1114
5WSG|1|L|G|1115

Current chains

Chain L

RNA (91-MER)

Nearby chains

Chain U

Small nuclear ribonucleoprotein Sm D3

Chain X

U2 small nuclear ribonucleoprotein B''