HL_5WT3_003
3D structure
- PDB id
- 5WT3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WT3_003 not in the Motif Atlas
- Homologous match to HL_5WT1_003
- Geometric discrepancy: 0.086
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
5WT3|1|C|G|53
5WT3|1|C|U|54
5WT3|1|C|U|55
5WT3|1|C|C|56
5WT3|1|C|A|57
5WT3|1|C|A|58
5WT3|1|C|A|59
5WT3|1|C|U|60
5WT3|1|C|C|61
Current chains
- Chain C
- RNA (73-MER)
Nearby chains
- Chain A
- tRNA (guanine(37)-N1)-methyltransferase Trm5a
Coloring options: