HL_5XJC_005
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAUUGCAGUACCUC
- Length
- 15 nucleotides
- Bulged bases
- 5XJC|1|H|C|164, 5XJC|1|H|U|167
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XJC|1|H|G|158
5XJC|1|H|U|159
5XJC|1|H|A|160
5XJC|1|H|U|161
5XJC|1|H|U|162
5XJC|1|H|G|163
5XJC|1|H|C|164
5XJC|1|H|A|165
5XJC|1|H|G|166
5XJC|1|H|U|167
5XJC|1|H|A|168
5XJC|1|H|C|169
5XJC|1|H|C|170
5XJC|1|H|U|171
5XJC|1|H|C|172
Current chains
- Chain H
- Homo sapiens small nuclear RNA (U2) gene
Nearby chains
- Chain X
- PRKR-interacting protein 1
- Chain n
- Small nuclear ribonucleoprotein G
- Chain o
- U2 small nuclear ribonucleoprotein A'
- Chain p
- U2 small nuclear ribonucleoprotein B''
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