HL_5XUZ_002

3D structure

PDB id

5XUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAGUG

Length

7 nucleotides

Bulged bases

5XUZ|1|F|A|-10, 5XUZ|1|F|U|-7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XUZ_002 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.0858

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61388.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5XUZ|1|F|C|-12
5XUZ|1|F|U|-11
5XUZ|1|F|A|-10
5XUZ|1|F|A|-9
5XUZ|1|F|G|-8
5XUZ|1|F|U|-7
5XUZ|1|F|G|-6

Current chains

Chain F

crRNA

Nearby chains

Chain A

LbCpf1

Chain B

crRNA

Chain E

LbCpf1