HL_5XWP_002

3D structure

PDB id

5XWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of LbuCas13a-crRNA-target RNA ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CAAAAAUGAAG

Length

11 nucleotides

Bulged bases

5XWP|1|E|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XWP_002 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1221

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5XWP|1|E|C|9
5XWP|1|E|A|10
5XWP|1|E|A|11
5XWP|1|E|A|12
5XWP|1|E|A|13
5XWP|1|E|A|14
5XWP|1|E|U|15
5XWP|1|E|G|16
5XWP|1|E|A|17
5XWP|1|E|A|18
5XWP|1|E|G|19

Current chains

Chain E

RNA (59-MER)

Nearby chains

Chain B

Uncharacterized protein