HL_5XYM_014

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5XYM|1|A|G|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1078

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5XYM|1|A|G|501
5XYM|1|A|G|502
5XYM|1|A|A|503
5XYM|1|A|C|504
5XYM|1|A|C|505
5XYM|1|A|A|506
5XYM|1|A|C|507
5XYM|1|A|C|508

Current chains

Chain A

23S RNA

Nearby chains