HL_5XYM_029

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

5XYM|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_029 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.124

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5XYM|1|A|G|1099
5XYM|1|A|A|1100
5XYM|1|A|A|1101
5XYM|1|A|A|1102
5XYM|1|A|C|1103
5XYM|1|A|A|1104
5XYM|1|A|G|1105
5XYM|1|A|C|1106

Current chains

Chain A

23S RNA

Nearby chains

Chain Z

50S ribosomal protein L30

Chain a

Uncharacterized protein bL37