HL_5XYM_035

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5XYM|1|A|U|1514, 5XYM|1|A|U|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1265

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5XYM|1|A|G|1507
5XYM|1|A|U|1508
5XYM|1|A|U|1509
5XYM|1|A|G|1510
5XYM|1|A|A|1511
5XYM|1|A|U|1512
5XYM|1|A|A|1513
5XYM|1|A|U|1514
5XYM|1|A|U|1515
5XYM|1|A|C|1516

Current chains

Chain A

23S RNA

Nearby chains

Chain T

50S ribosomal protein L23