HL_5XYM_036

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUCAGGGUAAUAC

Length

13 nucleotides

Bulged bases

5XYM|1|A|G|1677, 5XYM|1|A|U|1684

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|G|1673
5XYM|1|A|U|1674
5XYM|1|A|C|1675
5XYM|1|A|A|1676
5XYM|1|A|G|1677
5XYM|1|A|G|1679
5XYM|1|A|G|1680
5XYM|1|A|U|1681
5XYM|1|A|A|1682
5XYM|1|A|A|1683
5XYM|1|A|U|1684
5XYM|1|A|A|1685
5XYM|1|A|C|1686

Current chains

Chain A

23S RNA

Nearby chains

Chain N

50S ribosomal protein L17