HL_5XYM_039

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

5XYM|1|A|A|1835, 5XYM|1|A|A|1837, 5XYM|1|A|A|1839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0931

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5XYM|1|A|C|1833
5XYM|1|A|A|1834
5XYM|1|A|A|1835
5XYM|1|A|C|1836
5XYM|1|A|A|1837
5XYM|1|A|C|1838
5XYM|1|A|A|1839
5XYM|1|A|G|1840

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22