HL_5XYM_041

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5XYM|1|A|U|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_041 not in the Motif Atlas

Geometric match to HL_5D5L_003

Geometric discrepancy: 0.103

The information below is about HL_5D5L_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

5XYM|1|A|C|1912
5XYM|1|A|U|1913
5XYM|1|A|U|1914
5XYM|1|A|C|1915
5XYM|1|A|G|1916
5XYM|1|A|G|1917

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2