HL_5XYM_052

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5XYM|1|A|G|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_052 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1202

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|C|2475
5XYM|1|A|U|2476
5XYM|1|A|G|2477
5XYM|1|A|G|2478
5XYM|1|A|G|2479
5XYM|1|A|G|2480
5XYM|1|A|C|2481
5XYM|1|A|G|2482
5XYM|1|A|G|2483

Current chains

Chain A

23S RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27