HL_5XYM_053

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5XYM|1|A|A|2495, 5XYM|1|A|C|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1028

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5XYM|1|A|C|2491
5XYM|1|A|U|2492
5XYM|1|A|A|2493
5XYM|1|A|A|2494
5XYM|1|A|A|2495
5XYM|1|A|A|2496
5XYM|1|A|U|2497
5XYM|1|A|G|2498
5XYM|1|A|U|2499
5XYM|1|A|A|2500
5XYM|1|A|A|2501
5XYM|1|A|C|2502
5XYM|1|A|G|2503

Current chains

Chain A

23S RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27