HL_5XYM_054

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGACGGCAAUC

Length

11 nucleotides

Bulged bases

5XYM|1|A|C|2536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3949

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5XYM|1|A|G|2530
5XYM|1|A|G|2531
5XYM|1|A|A|2532
5XYM|1|A|C|2533
5XYM|1|A|G|2534
5XYM|1|A|G|2535
5XYM|1|A|C|2536
5XYM|1|A|A|2537
5XYM|1|A|A|2538
5XYM|1|A|U|2539
5XYM|1|A|C|2540

Current chains

Chain A

23S RNA

Nearby chains

Chain F

50S ribosomal protein L5