HL_5XYM_067

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

5XYM|1|A|C|3044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_067 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1311

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5XYM|1|A|G|3043
5XYM|1|A|C|3044
5XYM|1|A|A|3045
5XYM|1|A|G|3046
5XYM|1|A|A|3047
5XYM|1|A|C|3048
5XYM|1|A|C|3049
5XYM|1|A|A|3050
5XYM|1|A|C|3051

Current chains

Chain A

23S RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17