HL_5XYM_075

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

5XYM|1|A|G|760, 5XYM|1|A|A|761, 5XYM|1|A|G|762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_075 not in the Motif Atlas

Geometric match to HL_8CRE_052

Geometric discrepancy: 0.3334

The information below is about HL_8CRE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5XYM|1|A|A|758
5XYM|1|A|A|759
5XYM|1|A|G|760
5XYM|1|A|A|761
5XYM|1|A|G|762
5XYM|1|A|U|763

Current chains

Chain A

23S RNA

Nearby chains

Chain W

50S ribosomal protein L27