HL_5XYU_003

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCUGGGAAACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_003 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.205

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5XYU|1|A|C|151
5XYU|1|A|C|152
5XYU|1|A|U|153
5XYU|1|A|G|154
5XYU|1|A|G|155
5XYU|1|A|G|156
5XYU|1|A|A|157
5XYU|1|A|A|158
5XYU|1|A|A|159
5XYU|1|A|C|160
5XYU|1|A|G|164

Current chains

Chain A

16S RNA

Nearby chains

Chain T

30S ribosomal protein S20