HL_5XYU_008

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GACUGAGAUACGGC

Length

14 nucleotides

Bulged bases

5XYU|1|A|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|G|320
5XYU|1|A|A|321
5XYU|1|A|C|322
5XYU|1|A|U|323
5XYU|1|A|G|324
5XYU|1|A|A|325
5XYU|1|A|G|326
5XYU|1|A|A|327
5XYU|1|A|U|328
5XYU|1|A|A|329
5XYU|1|A|C|330
5XYU|1|A|G|331
5XYU|1|A|G|332
5XYU|1|A|C|333

Current chains

Chain A

16S RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20