HL_5Y58_003

3D structure

PDB id

5Y58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Ku70/80 and TLC1

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGCUAAAA

Length

9 nucleotides

Bulged bases

5Y58|1|Z|C|300, 5Y58|1|Z|A|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Y58_003 not in the Motif Atlas

Geometric match to HL_5Y58_001

Geometric discrepancy: 0.0144

The information below is about HL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19136.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

1

Unit IDs

5Y58|1|Z|U|297
5Y58|1|Z|G|298
5Y58|1|Z|G|299
5Y58|1|Z|C|300
5Y58|1|Z|U|301
5Y58|1|Z|A|302
5Y58|1|Z|A|303
5Y58|1|Z|A|304
5Y58|1|Z|A|305

Current chains

Chain Z

TLC1

Nearby chains

Chain E

ATP-dependent DNA helicase II subunit 1

Chain F

ATP-dependent DNA helicase II subunit 2