HL_5YLZ_003

3D structure

PDB id

5YLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5YLZ_003 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3911

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5YLZ|1|D|G|10
5YLZ|1|D|U|11
5YLZ|1|D|A|12
5YLZ|1|D|A|13
5YLZ|1|D|C|14
5YLZ|1|D|C|15
5YLZ|1|D|C|16

Current chains

Chain D

U6 snRNA

Nearby chains