HL_5YZG_005

3D structure

PDB id

5YZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

5YZG|1|H|C|164, 5YZG|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5YZG|1|H|G|158
5YZG|1|H|U|159
5YZG|1|H|A|160
5YZG|1|H|U|161
5YZG|1|H|U|162
5YZG|1|H|G|163
5YZG|1|H|C|164
5YZG|1|H|A|165
5YZG|1|H|G|166
5YZG|1|H|U|167
5YZG|1|H|A|168
5YZG|1|H|C|169
5YZG|1|H|C|170
5YZG|1|H|U|171
5YZG|1|H|C|172

Current chains

Chain H

U2 snRNA

Nearby chains

Chain n

Small nuclear ribonucleoprotein G

Chain o

U2 small nuclear ribonucleoprotein A'

Chain p

U2 small nuclear ribonucleoprotein B''