HL_5Z56_006

3D structure

PDB id

5Z56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

5Z56|1|H|C|164, 5Z56|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z56|1|H|G|158
5Z56|1|H|U|159
5Z56|1|H|A|160
5Z56|1|H|U|161
5Z56|1|H|U|162
5Z56|1|H|G|163
5Z56|1|H|C|164
5Z56|1|H|A|165
5Z56|1|H|G|166
5Z56|1|H|U|167
5Z56|1|H|A|168
5Z56|1|H|C|169
5Z56|1|H|C|170
5Z56|1|H|U|171
5Z56|1|H|C|172

Current chains

Chain H

U2 snRNA

Nearby chains

Chain n

Small nuclear ribonucleoprotein G

Chain p

U2 small nuclear ribonucleoprotein B''