HL_5Z58_006

3D structure

PDB id

5Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

5Z58|1|H|C|164, 5Z58|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z58|1|H|G|158
5Z58|1|H|U|159
5Z58|1|H|A|160
5Z58|1|H|U|161
5Z58|1|H|U|162
5Z58|1|H|G|163
5Z58|1|H|C|164
5Z58|1|H|A|165
5Z58|1|H|G|166
5Z58|1|H|U|167
5Z58|1|H|A|168
5Z58|1|H|C|169
5Z58|1|H|C|170
5Z58|1|H|U|171
5Z58|1|H|C|172

Current chains

Chain H

U2 snRNA

Nearby chains

Chain n

Small nuclear ribonucleoprotein G

Chain p

U2 small nuclear ribonucleoprotein B''